DNA Damage Atlas


GSM2585700-NHF1_6-4_Control_B




Basic Information

Manual

Sample ID:   

SRR5461444


Source Project ID:   

GSE98025

Cell Type:   

NFH1


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

HS-Damage-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA115603569614218319.333-
chrUn_gl000220117005152270148063215.507-
chr10130262490130263077130262878144.552-
chrUn_gl00022010156910829810408788.2853-
chr814406657714406683614406659266.5083+
chr410778022110778048710778022151.9663+
chr1251342709513429685134271249.2654+
chr2060924774609251826092487145.4774+
chr1212502645012502685412502647544.7433+
chr1917741623177419741774186843.7745-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10130262762130262892130262878496.471-
chr21469735064697354646973531312.613-
rDNA134421761914218301.955-
chr2861332628613330086133290297.285-
chrUn_gl000220147587148541148063269.948-
chr12513427095134274351342712251.373+
chr2134616084134616116134616085228.793+
chr1260936362609366926093667203.377-
chr8583612585836129758361285202.571-
chr7147065080147065111147065106200.495-
Download the Full Merged Peak List



Motif Analysis

Manual





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