DNA Damage Atlas

GSM2630039-K562_PD_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5572777


Source Project ID:   

GSE99011

Cell Type:   

K562


Organism:   

Homo sapiens


Strain:   

CCL-243


Genotype:   

WT


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2630035-K562_input_1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022667777239700376.5219/
rDNA19073194551926324.7072/
rDNA41459424144217118.0907/
chrUn_gl00022014354714395714375112.8755/
chr9_gl000199_random5074851420512405.47513/
chr71344176451344180251344178344.63068/
chr53772230637722661377224823.60493/
chr71061134931061138551061136733.53522/
chr78999625589996670899964613.46921/
chr53820985638210229382100413.43097/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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