Sample Detail

Basic Information

Manual

Sample ID:

SRR5572783

Source Project ID:

GSE99011

Cell Type:

WPMY-1

Organism:

Homo sapiens

Strain:

CRL-2854

Genotype:

Spike-in percentage:

2 μg DNA fragments + 15 pg spike_in sequences

Layout:

PAIRED

Instrument model:

HiSeq X Ten

Technique:

dU-seq

Others:

control:GSM2630041-WPMY-1_input_1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr9_gl000199_random	155496	156074	155911	30.7974	/
chr9_gl000199_random	91325	92074	91868	26.2679	/
chr9_gl000199_random	49723	49962	49841	19.6002	/
chr9_gl000199_random	82768	83158	82962	13.6129	/
chrUn_gl000220	143582	143881	143730	12.5336	/
rDNA	39191	39467	39328	12.4466	/
chr5	4474797	4475087	4474941	7.53819	/
chr5	75485131	75485507	75485318	5.81403	/
chr8	128358298	128358767	128358490	5.32702	/
chr5	11618650	11619255	11619075	5.16192	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr9_gl000199_random	155496	156074	155911	30.7974	/
chr9_gl000199_random	49723	49962	49841	19.6002	/
chr9_gl000199_random	82768	83158	82962	13.6129	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download