Sample Detail

Basic Information

Manual

Sample ID:

SRR5572784

Source Project ID:

GSE99011

Cell Type:

WPMY-1

Organism:

Homo sapiens

Strain:

CRL-2854

Genotype:

Spike-in percentage:

2 μg DNA fragments + 15 pg spike_in sequences

Layout:

PAIRED

Instrument model:

HiSeq X Ten

Technique:

dU-seq

Others:

control:GSM2630042-WPMY-1_input_2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr9_gl000199_random	155461	156339	155870	21.7891	/
chr9_gl000199_random	72756	73069	72911	21.3923	/
chrUn_gl000220	145051	145334	145191	12.3933	/
chr9_gl000199_random	82767	83319	82961	11.5524	/
chr9_gl000199_random	49572	50207	49869	8.53605	/
chrUn_gl000214	64771	65313	65012	8.23589	/
chr5	4735324	4735807	4735509	6.60138	/
chr9	6154179	6154538	6154357	6.21706	/
chr5	5040438	5040810	5040623	5.9998	/
chr5	18854197	18854926	18854375	5.68588	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr9_gl000199_random	155496	156074	155870	32.5466	/
chr9_gl000199_random	49723	49962	49869	20.6783	/
chr9_gl000199_random	82768	83158	82961	15.9423	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download