Sample Detail

Basic Information

Manual

Sample ID:

SRR5572787

Source Project ID:

GSE99011

Cell Type:

293T

Organism:

Homo sapiens

Strain:

CRL-3216

Genotype:

Spike-in percentage:

2 μg DNA fragments + 15 pg spike_in sequences

Layout:

PAIRED

Instrument model:

HiSeq X Ten

Technique:

dU-seq

Others:

control:GSM2630047-HEK293T_input_1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr9_gl000199_random	91281	92181	91880	37.2342	/
rDNA	31026	32638	31975	30.5941	/
rDNA	22707	23855	23548	23.1321	/
rDNA	41358	42496	42209	13.8901	/
chrUn_gl000220	136662	137141	136900	10.56	/
chrUn_gl000220	132689	133748	132972	10.1499	/
chr9_gl000199_random	159897	160844	160127	7.34431	/
chr1	163304135	163304696	163304414	6.76233	/
chr4	118452946	118453507	118453225	6.76233	/
chr13	72610314	72610997	72610589	6.48016	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	23199	23799	23548	40.0443	/
rDNA	31101	32602	31975	32.8566	/
chrUn_gl000220	132689	133188	132972	20.2734	/
rDNA	41429	42401	42209	16.2623	/
chrUn_gl000220	136662	137088	136900	11.8738	/
chr13	62890014	62890717	62890474	6.2958	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download