DNA Damage Atlas

GSM2630050-HEK293T_control_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5572788


Source Project ID:   

GSE99011

Cell Type:   

293T


Organism:   

Homo sapiens


Strain:   

CRL-3216


Genotype:   

WT


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2630048-HEK293T_input_2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28008292452853640.1886/
rDNA31101326023192135.2119/
rDNA23199237992358134.0144/
chr9_gl000199_random15545815606215587327.7244/
chr9_gl000199_random82735831478294017.782/
chrUn_gl00022013258513318813294115.6208/
rDNA41429424014217415.6128/
chrUn_gl00022013630313708813685812.3325/
chr1022680489226807882268063710.501/
chrUn_gl00022013351413381613366410.3967/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA31101326023192135.2119/
rDNA23199237992358134.0144/
chrUn_gl00022013666213708813685819.0402/
chrUn_gl00022013268913318813294118.8765/
rDNA41429424014217415.6128/
chrUn_gl00022013351413374813366413.4179/
chr136289001462890717628904454.46627/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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