Sample Detail

Basic Information

Manual

Sample ID:

SRR5572789

Source Project ID:

GSE99011

Cell Type:

293T

Organism:

Homo sapiens

Strain:

CRL-3216

Genotype:

Spike-in percentage:

2 μg DNA fragments + 15 pg spike_in sequences

Layout:

PAIRED

Instrument model:

HiSeq X Ten

Technique:

dU-seq

Others:

control:GSM2630047-HEK293T_input_1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr9_gl000199_random	91319	92114	91876	34.9666	/
chrUn_gl000226	0	304	151	31.8663	/
rDNA	23194	23819	23569	30.9995	/
rDNA	31092	32588	31902	26.7466	/
rDNA	41495	42421	42191	16.3745	/
chrUn_gl000220	125299	125704	125500	9.35975	/
chrUn_gl000214	64220	65125	64532	8.37723	/
chrUn_gl000220	136180	137059	136812	7.66669	/
chr1	99635867	99636282	99636073	6.08948	/
chr13	65816957	65817379	65817167	5.98847	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr9_gl000199_random	91319	92114	91876	34.9666	/
rDNA	23206	23793	23569	33.0063	/
rDNA	41495	42390	42191	16.9417	/
chrUn_gl000220	136608	137055	136812	11.3071	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download