Sample Detail

Basic Information

Manual

Sample ID:

SRR5572790

Source Project ID:

GSE99011

Cell Type:

293T

Organism:

Homo sapiens

Strain:

CRL-3216

Genotype:

Spike-in percentage:

2 μg DNA fragments + 15 pg spike_in sequences

Layout:

PAIRED

Instrument model:

HiSeq X Ten

Technique:

dU-seq

Others:

control:GSM2630048-HEK293T_input_2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	28008	28817	28536	45.679	/
rDNA	23206	23793	23568	32.245	/
chr9_gl000199_random	91030	92127	91885	24.6488	/
rDNA	41443	42390	42182	18.0836	/
chrUn_gl000220	132608	133196	132951	12.2629	/
chrUn_gl000220	136608	137055	136830	11.0901	/
chr9_gl000199_random	51016	51387	51200	10.9325	/
chrUn_gl000220	133417	133802	133608	9.36441	/
chr13	78994156	78994608	78994381	6.97928	/
chr13	67818786	67819451	67819017	6.09919	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr9_gl000199_random	91319	92114	91885	33.4454	/
rDNA	23206	23793	23568	32.245	/
rDNA	41495	42390	42182	19.1343	/
chrUn_gl000220	136608	137055	136830	11.0901	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download