DNA Damage Atlas


GSM2635560-END_seq_aB12h_ETO




Basic Information

Manual

Sample ID:   

SRR5585906


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Spike-in Intensity:   

8.61051


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635561-END_seq_aB12h_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.199798



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994511345106782445.92-
chr1581077144810782118107768635.2377+
chr351169946511709975117047226.1162-
chr214717696114717946514717792622.5009-
chr113335329713335436613335377820.4215+
chr743377860433790204337846520.162-
chr1633820210338221593382092719.8477+
chr1582039902820414738204090919.8438+
chr653821675385181538276518.509-
chr414095738514095864014095809918.5028-
Download the Full Peak List



Motif Analysis

Manual





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