DNA Damage Atlas


GSM2635562-END_seq_aB24h_ETO




Basic Information

Manual

Sample ID:   

SRR5585908


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

24hrs


Cell Phase:   

M


Spike-in Intensity:   

5.99465


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635563-END_seq_aB24h_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.233882



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389991911010106781598.1-
chrX143482875143483576143483102222.607-
chr1581077135810782878107768611.5818+
chr163382018933821639338209249.63381+
chr11333532161333543401333537788.94919+
chr35116987651171168511704728.59411-
chr31072332961072345431072336728.23403+
chr21471769651471790421471779327.68843+
chr195691915656920364569197257.65976-
chr184368761436982743693827.14008+
Download the Full Peak List



Motif Analysis

Manual





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