DNA Damage Atlas


GSM2635564-END_seq_DRBexp_aB12h_DRB




Basic Information

Manual

Sample ID:   

SRR5585910


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

DRB


Treatment Time:   

90mins


Treatment Dose:   

150uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Spike-in Intensity:   

7.65851


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635567-END_seq_DRBexp_aB12h_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.260253



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr103110985311575231113834.23071+
chr87143260971433500714331704.01437-
chr129357650393577632935771403.77794-
chr56239723062397858623976253.66333+
chr32639334026394263263937362.87456+
chr175765451657655343576548442.72092+
chr51466663021466670791466667002.67989-
chr113118545312516231245912.66467+
chr99030180390302759903023842.56455-
chr11172627011727218117266372.42677+
Download the Full Peak List



Motif Analysis

Manual





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