DNA Damage Atlas


GSM2635565-END_seq_DRBexp_aB12h_ETO_DRB




Basic Information

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Sample ID:   

SRR5585911


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + DRB


Treatment Time:   

30mins + 90mins


Treatment Dose:   

50uM Etoposide + 150uM DRB


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Spike-in Intensity:   

6.78404


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635567-END_seq_DRBexp_aB12h_NT


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.296217



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389986211349106781394.11-
chr1581077263810782878107768623.9174+
chr310723307210723450410723367219.2086+
chr458984691589858795898524316.8565-
chr1633820347338214453382092416.5284+
chr351169996511710725117047213.8526-
chr653822515384948538277313.1522+
chr113335317013335429513335377812.9205+
chr1149108743491095544910898212.1358+
chr766388870663900356638947112.1351-
Download the Full Peak List



Motif Analysis

Manual





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