DNA Damage Atlas


GSM2635566-END_seq_DRBexp_aB12h_ETO




Basic Information

Manual

Sample ID:   

SRR5585912


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Spike-in Intensity:   

6.67421


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635567-END_seq_DRBexp_aB12h_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.235699



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563891022511203106782075.2-
chr1581077127810782878107768618.6244+
chr1599370058993712309937065017.5025-
chr458984649589859125898524317.172-
chr310723280610723440410723367215.8312+
chr653825605384948538276515.5042-
chr1633820355338217673382092415.1618+
chr351169947511710855117047214.3859-
chr1149108682491093614910898213.7657+
chr743377957433788584337846713.6663+
Download the Full Peak List



Motif Analysis

Manual





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