DNA Damage Atlas


GSM2635568-END_seq_MCF7_ETO




Basic Information

Manual

Sample ID:   

SRR5585914


Source Project ID:   

GSE99194

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

48hrs


Spike-in Intensity:   

no spike in


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635569-END_seq_MCF7_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000324



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2039941933995247399474029.9826+
chr412503235412503386812503325529.0703+
chr124528155245293762452846223.8066-
chr1112453860312453998812453914322.8679-
chr1757517527575199585751839020.1313-
chr2020388049203893722038877420.0738-
chr2039967753399706013996886519.4655-
chr1075666087568094756750819.3401+
chr812046334612046489012046425219.1758-
chr1653725587537266495372617918.9984+
Download the Full Peak List



Motif Analysis

Manual





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