DNA Damage Atlas


GSM2635570-END_seq_MEF_ETO




Basic Information

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Sample ID:   

SRR5585916


Source Project ID:   

GSE99194

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12.5days


Spike-in Intensity:   

2.74976


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635571-END_seq_MEF_NT


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.031899



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389990811342106753695.6-
chr283798938380890838049635.2829-
chr1111165240111165364511165301719.074+
chr175925533759263937592587616.1282+
chr1594769051947698309476925314.7858-
chr1011859217711859337011859276914.0908+
chr351169879511713495117046814.0003-
chr214717744614717913014717792613.2071-
chr1341634322416351834163478312.534-
chr910585750810585867010585807312.4128+
Download the Full Peak List



Motif Analysis

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