DNA Damage Atlas


GSM2635572-END_seq_MEF_top2ko_ETO




Basic Information

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Sample ID:   

SRR5585918


Source Project ID:   

GSE99194

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

TOP2B-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12.5days


Spike-in Intensity:   

2.09242


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635573-END_seq_MEF_top2ko_NT


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.021401



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638998581135110675912.651-
chrX11628716511628771811628716914.1865+
chr113099913310430631011767.22159-
chr61459326251459335401459329455.19219+
chr161343760813438566134381804.796-
chr18185952881860074818598733.77815+
chr85191465351914863519146633.7209+
chr41556003931556013071556008453.69322+
chr83237538132376135323757423.56496-
chr174260296842603972426033783.54894+
Download the Full Peak List



Motif Analysis

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