DNA Damage Atlas


GSM2635574-END_seq_Nalm6_ETO




Basic Information

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Sample ID:   

SRR5585920


Source Project ID:   

GSE99194

Cell Type:   

Nalm6


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

48hrs


Spike-in Intensity:   

no spike in


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635575-END_seq_Nalm6_NT


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.002025



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1011717674611717802611717741919.6572+
chr1112453853212454016912453914316.379-
chr317623173317623249917623216013.7207+
chr683924539839256858392511513.5393+
chr1075669067568023756750513.445+
chr143692632436939814369306713.2699+
chr710455872210455981710455927113.2125-
chr812046364812046488612046425213.0413-
chr1761502294615034576150289013.0259-
chr1463742988637444826374371312.9294+
Download the Full Peak List



Motif Analysis

Manual





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