DNA Damage Atlas


GSM2635576-END_seq_NRN_ETO




Basic Information

Manual

Sample ID:   

SRR5585922


Source Project ID:   

GSE99194

Cell Type:   

Cortical neurons


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

18days


Spike-in Intensity:   

no spike in


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635577-END_seq_NRN_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.009873



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994411244106782821.4-
chr610087555510087661810087614345.4377-
chr1633820327338220733382092735.8516+
chr351169945511717135117047233.4565-
chr283784058381327838049932.046+
chr962549444625509386255006931.8642-
chr1111165240711165476711165301729.5338+
chr1621192271211933932119285728.3666+
chr573853725738551087385413526.4227-
chr910585746310585863410585807324.2113+
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab