DNA Damage Atlas


GSM2635578-END_seq_PB_ETO




Basic Information

Manual

Sample ID:   

SRR5585924


Source Project ID:   

GSE99194

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

48hrs


Cell Phase:   

G1


Spike-in Intensity:   

8.69723


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635579-END_seq_PB_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.028902



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389984111340106755272.1-
chr214717714514717941614717792658.789-
chr1633820404338214163382092745.9285+
chr1581077154810782068107768642.4655+
chr563765760637676006376700440.3171-
chr1582039602820414868204090934.1484+
chr1693291578932937469329307033.5416-
chr1727032260270335432703299132.3762+
chr792866348928672749286682331.5737+
chr1011859164911859400511859276930.6337+
Download the Full Peak List



Motif Analysis

Manual





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