DNA Damage Atlas


GSM2635580-END_seq_rB_ETO




Basic Information

Manual

Sample ID:   

SRR5585926


Source Project ID:   

GSE99194

Cell Type:   

Resting primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G0


Spike-in Intensity:   

10.2622


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635581-END_seq_rB_NT


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.016318



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389984111345106782328.25-
chr351169969511713695117047238.424-
chr458984674589861065898525036.9464-
chr1633820189338217733382092733.7133+
chr1341634254416354134163478327.5282-
chr1581077097810782878107768624.7327+
chr653817615385146538276524.2212-
chr1582039984820414738204090923.5589+
chr412358360512358480212358430923.5549+
chr563766302637675916376700422.5293-
Download the Full Peak List



Motif Analysis

Manual





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