DNA Damage Atlas


GSM2635582-END_seq_Species_Mus_aB12h_ETO




Basic Information

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Sample ID:   

SRR5585928


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Spike-in Intensity:   

1.7131


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635583-END_seq_Species_Mus_aB12h_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.22935



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994311300106751812.81-
chr214717709114717924914717792621.9704-
chr1581077104810782938107768621.8145+
chr351169959511710855117047819.2353+
chr1011859225111859338511859276915.4168+
chr1633820219338219343382092715.2074+
chr1341634272416353534163478313.2753-
chr768302051683039136830282613.0283+
chr414095740214095858214095809912.8207-
chr1727032448270335672703299112.4037+
Download the Full Peak List



Motif Analysis

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