DNA Damage Atlas


GSM2635584-END_seq_Species_Spr_aB12h_ETO




Basic Information

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Sample ID:   

SRR5585930


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell-Spretus


Organism:   

Mus spretus


Strain:   

Spretus


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Spike-in Intensity:   

3.03214


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635585-END_seq_Species_Spr_aB12h_NT


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.015027



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45639611816123791205536.0946-
chr1581077114810782878107768634.2879+
rDNA4466729632.8236+
chr351169995511711675117046827.5929-
chr214717692014717913514717792626.269-
chr458984577589858585898524324.0429-
chrX36870691368713323687108722.7994+
chr710369791710369869810369807421.9987+
chr313212428213212488013212467621.9646+
chr1016967435169680131696757121.2096+
Download the Full Peak List



Motif Analysis

Manual





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