DNA Damage Atlas


GSM2635586-END_seq_T_ETO




Basic Information

Manual

Sample ID:   

SRR5585932


Source Project ID:   

GSE99194

Cell Type:   

Primary T cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

4hrs


Spike-in Intensity:   

9.29331


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635587-END_seq_T_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.454055



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389991611342106782697.91-
chr1581077134810782878107767842.9152-
chr1633820470338214423382092723.9616+
chr351169560511712205117047221.5755-
chr214717712714717924014717792620.0158-
chr458984692589859125898525014.0336-
chr1011859220911859342511859276913.4455+
chr1721514917215172992151596413.417+
chr610087562710087652510087614313.3632-
chr1586038396860396918603908613.197+
Download the Full Peak List



Motif Analysis

Manual





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