DNA Damage Atlas


GSM2635588-END_seq_TRPexp_aB12h_ETO




Basic Information

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Sample ID:   

SRR5585934


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

30mins


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Spike-in Intensity:   

8.33355


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635590-END_seq_TRPexp_aB12h_NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.064879



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389987211345106781551.46-
chr214717710414717949514717792833.0883+
chr871432773714334867143316532.5665-
chr392023156920240869202371630.0913-
chr115170552915170692815170632326.0766-
chr1727534277275357322753483825.2809-
chr1727032264270335672703299124.4183+
chr1633820144338217733382092723.0449+
chr768301217683044326830282623.0159+
chr613494732613494823013494765819.6059+
Download the Full Peak List



Motif Analysis

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