DNA Damage Atlas


GSM2635589-END_seq_TRPexp_aB12h_ETO_TRIPTOLIDE




Basic Information

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Sample ID:   

SRR5585935


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Triptolide


Treatment Time:   

30mins + 90mins


Treatment Dose:   

50uM Etoposide + 3uM Triptolide


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Spike-in Intensity:   

9.4224


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635590-END_seq_TRPexp_aB12h_NT


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.080466



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389986311312106782015.51-
chr768302014683036356830282640.8506+
chr214717695614717948214717792834.5545+
chr392023124920238859202371632.1018-
chr871432635714335267143317129.3376-
chr1727534277275357372753483825.8114-
chr1581077109810782868107768922.2088+
chr1727032432270335842703299121.9979+
chr1633820333338217923382092720.9446+
chr1149108384491095534910898320.41+
Download the Full Peak List



Motif Analysis

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