DNA Damage Atlas


GSM2635591-END_seq_TRPexp_aB12h_TRIPTOLIDE




Basic Information

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Sample ID:   

SRR5585937


Source Project ID:   

GSE99194

Cell Type:   

Activated primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Triptolide


Treatment Time:   

90mins


Treatment Dose:   

3uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

12hrs


Cell Phase:   

G1


Spike-in Intensity:   

14.3862


Spike-in percentage:   

1%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Others:   

control: GSM2635590-END_seq_TRPexp_aB12h_NT


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.073407



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1311060265211060361411060305245.6059+
chr871432794714334867143317140.5111-
chr990301792903027799030239021.7609-
chr1111042208011042249111042232916.9545-
chr1293576483935774809357714111.3346-
chr82578495525785825257852627.06105-
chr113111760311647431136236.37481+
chr113099930310421831020226.03522-
chr88423679584237709842372235.24148-
chr86599822365999114659985484.81081+
Download the Full Peak List



Motif Analysis

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