DNA Damage Atlas

GSM2664277-Testis_SSDS_Sample_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5676302


Source Project ID:   

GSE99921

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Harvested Time:   

age: Adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM2664289-Testis_Input_SSDS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX80132148017049801504712.964+
chrX10390981310391196610391103512.7005+
chr398135402981395779813743412.6868+
chr514483750714484149714483958812.4603-
chrX38313738383166243831509012.1251+
chrX52952019529565745295430212.0062+
chrX51837064518409905183907711.9816-
chrX78486604784901817848833111.9211-
chr1189609587896142688961186011.6014-
chrX11715455117191801171703810.7288+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrX11268149811268161511268152137.5899+
chr193294160932942459329420635.994-
chr1211300634911300649111300642234.3385+
chr1067978215679783026797823332.9687+
chr1690783771907839839078392932.922-
chr815120890151212271512107332.6263+
chrX51890197518905295189046332.2537+
chrX10124481610124515610124514631.4948+
chr649116948491174274911716331.1379+
chr267968056796886679684130.6894-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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