DNA Damage Atlas

GSM2664281-Testis_SSDS_Sample_7

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5676306


Source Project ID:   

GSE99921

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Harvested Time:   

age: Adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM2664289-Testis_Input_SSDS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX80125688017265801504727.2174+
chrX52951565529567675295430227.105+
chr514483751614484151314483958826.1516-
chr398135489981398029813743425.9792+
chrX51836827518410645183907725.824-
chr1189609021896141348961186025.4442-
chrX11715456117192741171703824.9157+
chr310761426410761864410761681124.6375+
chr1092678991926832729268097323.5384-
chrX16653371416653884616653642223.3352-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211300634911300649111300642270.1691+
chrX51890197518905295189046369.6507+
chr891618389916186869161853567.7307-
chrX10255376010255429910255383166.9685+
chr514483900814483973514483958865.9423-
chr1849933996499342034993408665.3914-
chrX42215622422162504221595763.7644+
chr1067978215679783026797823362.6667+
chr264113880641140426411391462.6667+
chrX11268149811268161511268152162.6667+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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