Sample Detail

Basic Information

Manual

Sample ID:

SRR5676309

Source Project ID:

GSE99921

Cell Type:

Ovary

Organism:

Mus musculus

Strain:

C57BL/6J

Genotype:

Harvested Time:

age: 15.5 days post coitum

Layout:

PAIRED

Instrument model:

Illumina HiSeq 2500

Technique:

ChIP-seq (anti-DMC1)

Others:

control: GSM2664290-Ovary_Input_SSDS

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr4	151967938	151971594	151969703	37.6034	+
chr8	31089950	31092572	31091280	35.692	+
chr6	140589501	140592581	140591554	32.8046	-
chr3	38521173	38523323	38522062	31.9716	-
chr17	32050373	32052732	32051826	31.5966	+
chr11	89610420	89613796	89611860	30.6643	-
chr1	134670391	134672387	134671561	29.0444	-
chr11	5154066	5157043	5155604	28.9321	-
chr8	36569690	36572002	36571020	28.6568	+
chr11	70608699	70611081	70609778	28.51	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr8	31090024	31092198	31091280	41.9043	+
chr5	144838270	144840525	144839588	41.1336	-
chr17	32050954	32052732	32051826	38.8938	+
chr4	151967952	151971594	151969703	37.748	+
chr7	30008679	30010408	30009746	36.4036	+
chr6	140589745	140592581	140591554	35.627	-
chr5	27851723	27853715	27852730	35.339	+
chr11	89610420	89613457	89611860	33.8144	-
chr3	38904134	38906415	38905154	33.0401	+
chr11	5154411	5157043	5155604	32.7245	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download