DNA Damage Atlas

GSM2664285-Ovary_SSDS_Sample_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR5676310


Source Project ID:   

GSE99921

Cell Type:   

Ovary


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Harvested Time:   

age: 15.5 days post coitum


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Others:   

control: GSM2664290-Ovary_Input_SSDS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr415196795215197168715196970321.9722+
chr453523649535259945352494019.1585-
chr614058974514059288014059155416.0504-
chr1189609982896134578961186015.3419-
chr1226687844266907252668948914.5545-
chr527851723278537152785273014.4343+
chr831090024310921983109128014.3281+
chr614286072914286345814286203214.0482+
chr1487160715871623178716127713.8351+
chr891617143916197249161853513.4612-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr415196795215197159415196970322.5333+
chr453523649535259945352494019.1585-
chr1189610420896134578961186017.3573-
chr614058974514059258114059155417.3201-
chr1732050954320527323205182616.5085+
chr1211677410511677651311677538215.7965-
chr891617553916197249161853515.7275-
chr1226687990266907252668948915.3315-
chr338521173385233233852206214.488-
chr527851723278537152785273014.4343+
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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