DNA Damage Atlas

GSM2664291-Testis_SSDS_Prdm9ko

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5676316


Source Project ID:   

GSE99921

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Prdm9-/-


Harvested Time:   

age: Adult


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr153919558539200531391981208.64558+
chr21806274018067186180646918.00071+
chr52094873220953640209511506.68217-
chr127101357171018764710151036.55834-
chr22096600120971002209681336.41498-
chr58420679842494484226716.40799+
chrX4214676342152943421504026.30014+
chr88687865869177386900366.04657+
chr173113200311720131153405.9901-
chrX1078143361078182461078165135.88218+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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