DNA Damage Atlas


GSM2664292-Testis_SSDS_Dnmt3Lko




Basic Information

Manual

Sample ID:   

SRR5676317


Source Project ID:   

GSE99921

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Dnmt3L-/-


Harvested Time:   

age: 30 days post partum


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-DMC1)


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1189610090896140968961186013.5405-
chr843368811433717824337030412.6192-
chr338903738389065023890515412.4098+
chr338954658389582373895668711.5898-
chr514483756314484122414483958811.1124-
chr836569352365726213657102010.8588+
chr1212603532126065001260473010.549+
chr398135776981389639813743410.5124+
chr815119361151223761512107310.1861+
chr12284430622846988228456099.96373+
Download the Full Peak List



Motif Analysis

Manual





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