DNA Damage Atlas

GSM2675536-DIP_8oxodG_exp1_MCF10A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824432


Source Project ID:   

GSE100234

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

OxiDIP-Seq


Others:   

control: GSM2675535-Input_MCF10A


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2058139228581411885814011635.8773/
chr829971230221030073532.98/
chrUn_gl00022974709383868632.9447/
chr1648964026489673364896484432.0925/
chr312740406512740690612740541031.7687/
chr1572027465720292837202817431.5062/
chr813474927513475070013475009931.487/
chr813420619513420789913420725531.0179/
chr219123020219123168019123068630.0469/
chr1122169482218647221770929.689/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr814327189214327292814327235246.5261/
chr813981670713981900113981824743.2006/
chr829985430186230073540.5416/
chrUn_gl00022978129383868639.9704/
chr1648964309489669614896484439.9685/
chr219123020219123137519123068637.6637/
chr312740444012740690612740541036.4366/
chr913749090013749253013749144035.7745/
chr1572027550720291687202817435.2941/
chr813441448313441613713441561335.2206/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab