DNA Damage Atlas

GSM2675537-DIP_8oxodG_exp2_MCF10A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR5714924


Source Project ID:   

GSE100234

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

OxiDIP-Seq


Others:   

control: GSM2675535-Input_MCF10A


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA13495151051399124.5892/
chr1523684756236871482368653821.7769/
chr2223891477238953832389322120.567/
chr1974277257429474742879419.9215/
chrUn_gl000216413233201519.6092/
chr122825509322826035022825903818.8046/
chr913215694213216065413215891818.7418/
rDNA27985292352857218.7062/
chr812467101612467276912467160818.5553/
chr1721309870213117582131078317.9643/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA13495151051399124.5892/
chr1523684756236871482368653821.7769/
chr2223891477238953832389322120.567/
chr1974277257429474742879419.9215/
chr913215714513216065413215891819.793/
chrUn_gl000216413233201519.6092/
chr161668146169298616776519.3859/
chr122825509322826035022825903818.8046/
chr1164244564308064276118.7762/
rDNA27985292352857218.7062/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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