DNA Damage Atlas

GSM2675539-ChIP_gH2AX_exp2_MCF10A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5714926


Source Project ID:   

GSE100234

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2675535-Input_MCF10A


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819944.0986/
rDNA28400287992859917.8822/
chr187800560078017199780113996.58928/
chr71591060001591253991591156996.53004/
chr111349126001349465991349295995.48479/
chr81462438001462771991462604995.16873/
chr141072724001072895991072809994.92194/
chr81462294001462417991462355994.73526/
chr81462784001463013991462898994.71393/
chr12492010002492145992492077994.45525/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM780016399819956.7884/
chr71591094001591245991591156997.53886/
chr187800560078017199780113996.58928/
chr81462294001462395991462355995.59069/
chr81462438001462771991462604995.16873/
chr141072728001072889991072809995.16233/
chr12492060002492143992492077995.14742/
chr81462784001462983991462898995.03707/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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