DNA Damage Atlas

GSM2675541-DIP_8oxodG_exp1_MEF

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR5714928


Source Project ID:   

GSE100234

Cell Type:   

MEF


Organism:   

Mus musculus


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

OxiDIP-Seq


Others:   

control: GSM2675540-Input_MEF


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr4130201419130209443130206690107.505/
chr3154216860154221763154220678106.584/
chr17565321865653581756534609100.403/
chrX14114939914115633414115052894.855/
chrY90810761908141229081282791.879/
chr1112085390412085662812085457886.4504/
chr989616451896188188961756183.7476/
chr1787952126879546928795343983.6251/
chr912425617112425836712425764180.1373/
chr896661594966636519666258079.5579/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr4130201653130209443130206690110.682/
chr3154216860154221740154220678107.087/
chr17565321865653576356534609101.881/
chr989616730896187418961756198.4398/
chrX14114939914115620114115052896.7097/
chrY90810781908141229081282792.429/
chr1787952330879546658795343991.7259/
chr912425617112425813512425764189.5354/
chr1112085390412085655312085457888.8474/
chr1737050723706443370577886.5183/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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