DNA Damage Atlas

GSM2675542-DIP_8oxodG_exp2_MEF

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5714929


Source Project ID:   

GSE100234

Cell Type:   

MEF


Organism:   

Mus musculus


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

OxiDIP-Seq


Others:   

control: GSM2675540-Input_MEF


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrY90810781908141269081284481.4369/
chr413020165313020948513020680177.2416/
chr1756532173565357635653460975.4642/
chr315421662615422174015421857174.5894/
chr1787952330879546658795366670.1946/
chr1737050723706443370577170.1497/
chr912425615912425813512425765769.9913/
chr989616730896187418961744359.2082/
chr233933756339347373393410457.442/
chr1731464238314659383146514057.2908/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrY90810781908141229081284481.5344/
chr315421686015422174015421857178.055/
chr413020165313020944313020680177.658/
chr1756532186565357635653460975.7384/
chr912425617112425813512425765770.4189/
chr1787952330879546658795366670.1946/
chr1737050723706443370577170.1497/
chr1112085390412085655312085555162.3343/
chr233933756339346883393410460.462/
chr989616730896187418961744359.2082/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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