DNA Damage Atlas

GSM2679409-161130-Cut-PW21-5b-i11_KOH

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5740762


Source Project ID:   

GSE100352

Organism:   

Saccharomyces cerevisiae


Treatment:   

KOH


Genotype:   

rnh D57N TRP sml1D crt1D


Targeted break:   

digest: PmeI


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIII11365941319.01+
chrXVI5879753063941079.4+
chrX7132577161597153411040.19-
chrVII5285835306875291751000.95+
chrXII498661435737988.356+
chrII511474725773921.5+
chrXV51017157879.622+
chrM813508457882588878.445-
chrI121791400413319876.447-
chrV569368571093570445865.33-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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