DNA Damage Atlas


GSM2693330-ATRi-plus-APH_18h_RPAChIPSeq_rep1




Basic Information

Manual

Sample ID:   

SRR5803127


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor + Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

1uM ATR-45 inhibitor + 0.2uM Aphidicolin


Genotype:   

ATR+/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2693333-ATRi-plus-APH_18h_Input_for_rep1and2


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr331070493310737253107081211.4906/
chr883857511838610518385973210.3191/
chr779465974794675637946644310.0601/
chr61254176781254193781254180069.11723/
chr91219317521219334131219320958.67262/
chr104356305743564728435632928.3661/
chr115739576574475457429198.27558/
chr161567164215673236156719138.16013/
chr113572894935732013357315347.6572/
chr64774830947748692477484997.14143/
Download the Full Peak List



Motif Analysis

Manual





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