DNA Damage Atlas


GSM2693331-ATRi-plus-APH_18h_RPAChIPSeq_rep2




Basic Information

Manual

Sample ID:   

SRR5803128


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor + Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

1uM ATR-45 inhibitor + 0.2uM Aphidicolin


Genotype:   

ATR+/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2693333-ATRi-plus-APH_18h_Input_for_rep1and2


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1713548219135533241355292292.4107/
chrUn_JH58430461769687446255872.477/
chr629747317297497712974840669.0841/
chr930019373002629300213064.5745/
chrUn_JH58430472955733447314854.3673/
chr612261589612261959512261619347.3074/
chr687773158877786268777510641.4848/
chr1031127213113111311291541.1083/
chrX13505337613505471613505411340.7297/
chr1374527842745311427452967640.003/
Download the Full Peak List



Motif Analysis

Manual





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