DNA Damage Atlas


GSM2693332-ATRi-plus-APH_18h_RPAChIPSeq_rep3




Basic Information

Manual

Sample ID:   

SRR5803130


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor + Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

1uM ATR-45 inhibitor + 0.2uM Aphidicolin


Genotype:   

ATR+/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2693334-ATRi-plus-APH_18h_Input_for_rep3


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr51400986101401061991401035921.79756/
chr191174303811744268117439281.77754/
chr158929923989301184893002281.72573/
chr194172717041730159417277691.6999/
chr158270661782707869827071691.64792/
chr193772599337727838377275161.5856/
chr195859596258597450585962201.57281/
chr195409349154095024540946781.48647/
chr197642198764398776425771.4631/
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab