DNA Damage Atlas


GSM2693335-ATRi-plus-APH_9h_RPAChIPSeq_rep1




Basic Information

Manual

Sample ID:   

SRR5803132


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor + Aphidicolin


Treatment Time:   

9hrs


Treatment Dose:   

1uM ATR-45 inhibitor + 0.2uM Aphidicolin


Genotype:   

ATR+/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2693337-ATRi-plus-APH_9h_Input


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH58430461755698526256120.7286/
chr1713549051135534051355300410.5732/
chr68777218487775415877750989.34049/
chrUn_GL4563922176523317221598.9399/
chr61226158971226192451226163068.19287/
chr62974753829749865297484097.06157/
chr128428121884284368842826876.84044/
chr184297539542976510429758706.59458/
chr88385935483860969838596376.57204/
chr114450083444504416445026426.51526/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH58430461755687446256123.2646/
chr687773608877754158777509814.5782/
chr1713549051135533221355300410.7787/
chrUn_GL45639221967232792215910.4778/
chr25269612452696648526964559.15154/
chr103112722311307631129218.48905/
chr68633102186333019863321888.35236/
chr61226158971226192451226163068.19287/
chr184297549942976389429758708.11807/
chr146327798163282452632801627.76532/
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab