DNA Damage Atlas


GSM2693336-ATRi-plus-APH_9h_RPAChIPSeq_rep2




Basic Information

Manual

Sample ID:   

SRR5803133


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor + Aphidicolin


Treatment Time:   

9hrs


Treatment Dose:   

1uM ATR-45 inhibitor + 0.2uM Aphidicolin


Genotype:   

ATR+/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2693337-ATRi-plus-APH_9h_Input


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1713548384135533221355291688.726/
chr930019383002634300212771.3505/
chr629747487297498282974840969.4559/
chrUn_JH58430472964733387315049.2573/
chrUn_JH58430461755687446256847.8472/
chr977720789777213987772097532.2228/
chrX13505368813505488313505414732.1727/
chr687773608877772248777510531.6754/
chr1374527983745311497452968131.4973/
rDNA11109544028.0782/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr17135490511355332213552916101.082/
chr629747538297498282974840971.0028/
chrUn_JH58430461755687446256847.8472/
chr977720789777211977772097547.1157/
chr1374528202745301927452968145.0796/
chr687773608877754158777510542.5528/
chrX13505368813505473913505414736.5808/
chr510433060910433232410433116729.4233/
chr1135732194357329793573242429.0797/
chr1189081605890822358908188127.9703/
Download the Full Merged Peak List



Motif Analysis

Manual





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