DNA Damage Atlas

GSM2693338-ATRi_18h_RPAChIPSeq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5803135


Source Project ID:   

GSE115625

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

ATR-45 inhibitor


Treatment Time:   

18hrs


Treatment Dose:   

1uM


Genotype:   

ATR+/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-RPA)


Others:   

control: GSM2693339-ATRi_18h_Input_for_rep1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH58430458374693066255728.2967/
chr1713549429135533251355300514.1075/
rDNA38440412413943611.0314/
chr687771688877754098777509310.8908/
chr61226158941226203251226162018.9253/
chrX1350536431350547621350541268.72649/
chr146327796063282494632801728.23027/
chr62974721329749828297485198.18857/
chr77332226273326088733247057.38332/
chr114449979044504783445026517.22222/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH58430461723693066255732.3039/
chr1713552487135533251355300521.1413/
chr1144501799445036534450265114.3713/
chr612261590412261846312261620113.4647/
chr687772042877754098777509311.8494/
chr68633105386332958863322049.92238/
chr146327831863281796632801729.90693/
chr69051829390520762905189629.7463/
chr68777557487777608877758859.636/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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