DNA Damage Atlas


GSM2769589-biotin-dCTP_K562_control_1




Basic Information

Manual

Sample ID:   

SRR5998390


Source Project ID:   

GSE99011

Cell Type:   

K562


Organism:   

Homo sapiens


Strain:   

CCL-243


Treatment:   

biotin-dCTP (other: biotin-dUTP)


Genotype:   

WT


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2769587-biotin-dCTP_K562_input_1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr139245389992455013924541144.2425/
chr104297513842975601429753024.17586/
chr71398215961398220241398217904.01541/
chr71089421091089427581089425393.9721/
chr12293664622293669492293667853.97006/
chr139120131991202024912016403.9613/
chr11923195921923200281923197343.94174/
chr107596952475969971759697683.84474/
chr139067011090670957906705733.80445/
chr71082848561082854651082850453.70387/
Download the Full Peak List



Motif Analysis

Manual





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