DNA Damage Atlas


GSM2769590-biotin-dCTP_K562_control_2




Basic Information

Manual

Sample ID:   

SRR5998391


Source Project ID:   

GSE99011

Cell Type:   

K562


Organism:   

Homo sapiens


Strain:   

CCL-243


Treatment:   

biotin-dCTP (other: biotin-dUTP)


Genotype:   

WT


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2769588-biotin-dCTP_K562_input_2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022014355614396514375911.1829/
chr222250357122505299225045223.19184/
chr71050623811050631721050628762.89117/
chr213362518533625712336254562.80791/
chr31953140031953145311953142632.80259/
chrUn_gl0002191067521074541069652.77864/
chr38893957889489088943762.73951/
chr204830929948309794483095152.71766/
chr116834183168342367683420512.63527/
chr31611096016111778161113082.63128/
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab