Sample Detail

Basic Information

Manual

Sample ID:

SRR5998396

Source Project ID:

GSE99011

Cell Type:

293T

Organism:

Homo sapiens

Strain:

CRL-3216

Treatment:

biotin-dCTP (other: biotin-dUTP)

Genotype:

Spike-in percentage:

2 μg DNA fragments + 15 pg spike_in sequences

Layout:

PAIRED

Instrument model:

HiSeq X Ten

Technique:

dU-seq

Others:

control:GSM2769593-biotin-dCTP_HEK293T_input_1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	28073	28794	28549	61.5945	/
rDNA	31117	32574	31954	39.1067	/
rDNA	23243	23755	23524	33.5495	/
chrUn_gl000220	132612	133174	132959	25.3463	/
chrUn_gl000220	136474	137085	136862	21.2565	/
rDNA	24295	24950	24742	19.8286	/
chrUn_gl000220	128881	130094	129926	14.5064	/
chr12	70760562	70760886	70760723	11.6378	/
chrUn_gl000214	64119	65352	64974	11.213	/
chrUn_gl000220	133403	133792	133596	9.69314	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	28073	28794	28549	61.5945	/
rDNA	31120	32574	31954	39.1874	/
chrUn_gl000220	136670	137037	136862	33.6765	/
rDNA	23243	23755	23524	33.5495	/
chrUn_gl000220	129766	130082	129926	26.5164	/
chrUn_gl000220	132616	133168	132959	25.8055	/
rDNA	24313	24949	24742	20.421	/
chrUn_gl000214	64309	65352	64974	13.0548	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download