DNA Damage Atlas

GSM2769596-biotin-dCTP_HEK293T_control_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5998397


Source Project ID:   

GSE99011

Cell Type:   

293T


Organism:   

Homo sapiens


Strain:   

CRL-3216


Treatment:   

biotin-dCTP (other: biotin-dUTP)


Genotype:   

WT


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2769594-biotin-dCTP_HEK293T_input_2


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28028287972854247.8505/
chrUn_gl00022012976613008212992332.7096/
rDNA31120325913194328.6688/
rDNA23228237572354628.1365/
chrUn_gl00022013667013703713685221.4048/
chrUn_gl00022013163013199213181020.5583/
chr1565667494656677746566763319.1959/
rDNA24313249492474016.252/
chrUn_gl00022012713412753412733313.4371/
chrUn_gl00021464309659616451911.2622/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28073287942854251.0361/
chrUn_gl00022012976613008212992332.7096/
rDNA23243237552354629.0707/
rDNA31120325743194329.004/
chrUn_gl00022013667013703713685221.4048/
rDNA24313249492474016.252/
chrUn_gl00021464309653526451915.0634/
chrUn_gl0002201326161331681328108.98804/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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