Sample Detail

Basic Information

Manual

Sample ID:

SRR5998398

Source Project ID:

GSE99011

Cell Type:

293T

Organism:

Homo sapiens

Strain:

CRL-3216

Treatment:

biotin-dCTP (other: biotin-dUTP)

Genotype:

Spike-in percentage:

2 μg DNA fragments + 15 pg spike_in sequences

Layout:

PAIRED

Instrument model:

HiSeq X Ten

Technique:

dU-seq

Others:

control:GSM2769593-biotin-dCTP_HEK293T_input_1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31085	32596	31939	30.398	/
rDNA	23231	23817	23579	29.9693	/
rDNA	28023	29236	28576	27.8426	/
chrUn_gl000220	133376	133823	133598	14.1036	/
chrUn_gl000220	132617	133188	132906	13.4067	/
chrUn_gl000220	125165	125686	125451	10.3718	/
chr13	62523916	62524283	62524098	9.81597	/
chrUn_gl000220	127165	128317	127998	8.99051	/
chrUn_gl000220	128857	129701	129350	8.53663	/
chr7	155249715	155250144	155249928	8.39734	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	28023	28819	28576	40.7313	/
rDNA	31094	32574	31939	31.0347	/
rDNA	23231	23817	23579	29.9693	/
chrUn_gl000220	132669	133188	132906	14.75	/
chrUn_gl000220	125246	125658	125451	13.1158	/
chrUn_gl000220	127165	128317	127998	8.99051	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download