DNA Damage Atlas


GSM2769602-5F_HEK293T_control_2




Basic Information

Manual

Sample ID:   

SRR5998403


Source Project ID:   

GSE99011

Cell Type:   

293T


Organism:   

Homo sapiens


Strain:   

CRL-3216


Treatment:   

5-fluorodeoxyuridine


Treatment Time:   

48hrs


Treatment Dose:   

5uM


Genotype:   

WT


Harvested Time:   

time point: after 48 h of treatment


Spike-in percentage:   

2 μg DNA fragments + 15 pg spike_in sequences


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

dU-seq


Others:   

control:GSM2769600-5F_HEK293T_input_2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28056288002853784.215/
rDNA23177238052357461.4658/
rDNA31138325683197658.8769/
chrUn_gl00022013160713200813181434.1795/
chrUn_gl00022012978213008012993031.9137/
chrUn_gl00022012717912756212736924.831/
rDNA41437424124214322.9509/
chrUn_gl00022013662313704713682119.1314/
chr9_gl000199_random72800730527292518.8696/
rDNA24310249562448813.4228/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28056287832853786.1842/
rDNA23247237752357473.1071/
rDNA31155325683197659.5852/
chrUn_gl00022013160713200813181434.1795/
chrUn_gl00022012978213008012993031.9137/
rDNA41582424124214326.9604/
chrUn_gl00022012717912754312736926.1271/
chrUn_gl00022013662313703913682119.4993/
rDNA24311249562448813.4436/
chrUn_gl00022012888612964712935012.4971/
Download the Full Merged Peak List



Motif Analysis

Manual





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